Welcome to a resources page for bioinformatics research. Here you will find links for data, tools, tutorials, and related resources that may be helpful to your work.

Software and installations

• RStudio
• R Programming Language
• Python Programming Language
• Git for Mac
• Git for Windows
• Git for all platforms
• Python for Biologists
• BioPython

Python programming resources

• Play with code from W3’s Python Tutorial
• Write code locally using Jupyter Interactive Python
• Think Python by Allen B. Downey: Publisher Website
• Python Programming Language
• Online R programming

Articles

• Getting started with Markdown

Tutorials

• Allegheny College Department of Computer Science tutorials
• Coding Train’s Git and GitHub for Poets
• Setting Up Git on Linux
• Setting up Git
• Getting Started with Python in VS Code
• 11 Best VS Code extensions for Python (2022)
• SSH keys
• Luman’s SSH keys video tutorial

Tools and learning links

• Virus Explorer
• TCoffee tutorial
• Hidden Markov Models (YouTube)
• The Double Helix (documentary, 17 mins)
• The Chemical Structure of DNA
• The Structure of DNA
• Definition of 5’ and 3’ end of DNA (video)
• What happens when your DNA is damaged?
• Mutations and Natural Selection
• Protein synthesis animation
• Lung Endothelial Cell Atlas
• COPD Cell Atlas
• COVID Cell Atlas
• Idiopathic Pulmonary Fibrosis Cell Atlas
• Codon Usage Database
• Comprehensive Antibiotic Resistance Database
• ermB anti resistance gene
• SIM alignment tool
• Blast analysis
• Diamond (BLAST alternative)
• HMMER
• Gene Ontology Resource
• Panther Classification System
• BLAST
• EGassembler
• ELM tool kit
• Protein Data Bank
• Predict protein
• String database
• Prosite: domains, families, and functional sites
• Needleman-Wunsch algorithm demo
• UGENE
• The Cell Map
• AmiGo Gene Ontology
• Genetics Home Reference
• Northeast Structural Genomics Consortium
• ModEval
• PyMol
• Qiime2
• DrugBank
• Augustus gene prediction

Research organizations

• Cataracts and Genetics
• National Human Genome Research Institute
• Max Planck Institute for Molecular Genetics

Note

If you find a good link for bioinformatics research that you believe would fit nicely here, please let me know.